PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_C5832B670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 329aa    MW: 37145.7 Da    PI: 4.9031
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_C5832B670.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.91.2e-2216429101
                            EES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  29 vvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                            vv+d ++f++ +Lp++Fkhsnf+SFv+QLn+YgF+kv+ ++         weF+++ F +g+++ll++i+r++
  Traes_3DL_C5832B670.1   1 VVWDLHHFSTVLLPRHFKHSNFSSFVKQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKNIRRRR 64 
                            69************************************999.........*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-22163IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-24163IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-20163IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.6E-19163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-91224IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-92537IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
VVWDLHHFST VLLPRHFKHS NFSSFVKQLN TYGFRKVDPD RWEFANEGFL RGQRHLLKNI  60
RRRRPPANTA PNQQSLGSYL EVGHFGNHTD TDQLKRDKQL LMAEVVKLRQ EQQSMKTHLK  120
GMEERLRGTE RKQQQMTAFL ARVFRNPELL KQLISLNGVR KELHDAMSKK RRRNIDQGPE  180
ADDMGASGSL EQESPVLSDP YESVELLGEV SVELLADGVP PELESSVALL ADGIPPDLEG  240
AAELLVDVIP SDLNDSGIDT DGVKPQDFGL GTCEVQQNRA QGVLHDDFWE ELMSRALSEE  300
DDSPVNLDDM DALSEKMDFL VPNSPTRAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15063RGQRHLLKNIRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228292.11e-155PREDICTED: heat stress transcription factor A-2b-like
RefseqXP_010228293.11e-155PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-136HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLW5DDF70.0W5DDF7_WHEAT; Uncharacterized protein
STRINGMLOC_75519.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-65heat shock transcription factor A6B
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]